My Publications

 

*first author publications

Urban, L.*, (…), Stammnitz, M. R. (2021) Freshwater monitoring with nanopore sequencing. eLife 10:e61504.

Oberle, A.* & Urban, L.*, Falch, S., Nagai, Y., Ulm, P. A., Hengstschläger, M., Feichtinger, M. (2021) 16S long-read nanopore sequencing is feasible and reliable for endometrial microbiome analysis. Reproductive Biomedicine Online, doi: https://doi.org/10.1016/j.rbmo.2021.03.016

Macey, J. R., (…), Urban, L., (…), Gemmell, N. G. (2021) Two deeply divergent co-existing mitochondrial genomes in the Tuatara. Nature Communications Biology 4, 116.

Edgecombe, J., Urban, L., Todd, E. V., Gemmell, N. J. (2021) Might gene duplication and neofunctionalization contribute to the sexual lability observed in fish? Accepted at Sexual Development

Jeunen, G.* & Urban, L.*, (…), Gemmell, N. (2020) Marine environmental DNA (eDNA) for biodiversity assessments: a one-to-one comparison between eDNA and baited remote underwater video (BRUV) surveys. Authorea preprint; under review at Molecular Ecology Resources.

 

PCAWG Transcriptome Core Group (incl. Urban, L.*), (...), Zhang, Z. (2020): Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types. Nature 578, 129–136.

The ICGC/TCGA PCAWG Consortium (incl. Urban, L.) (2020): Pan-cancer analysis of whole genomes. Nature 578, 82–93.

 

Bailey, M. H., (…), Urban, L., (…), PCAWG Consortium (2020) Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications 11:4748.

 

Li, C. H., (…), Urban, L., (…), PCAWG Consortium (2020) Sex differences in oncogenic mutational processes. Nature Communications 11:4330.

 

Urban, L.*, (…), Mueller, T. (2020): covRNA: discovering covariate associations in large-scale gene expression data. BMC Res Notes 13, 92.

 

Feichtinger, M.* & Urban, L.*, (…), Oberle, A. (2020): Oxford Nanopore Sequenzierung zur Bestimmung des Endometrium-Mikrobioms. Geburtshilfe und Frauenheilkunde 80(06). doi:10.1055/s-0040-1713190.

 

Linker, S.* & Urban, L.*, (…), Bonder, M. J. (2019): Combined single cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity. Genome Biology 20:30.

Avsec, Z., (…), Urban, L., (…), Gagneur, J. (2019): The Kipoi repository accelerates community exchange and reuse of predictive models for genomics. Nature Biotechnology 37, 592-600.

 

Calabrese, C.* & Lehmann, K. V.* & Urban, L.*, (...), Stegle O. (2017) Assessing the Gene Regulatory Landscape in 1,188 Human Tumors. bioRxiv preprint.

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